PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G24320.4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family SBP
Protein Properties Length: 474aa    MW: 50763.8 Da    PI: 8.8858
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G24320.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.51.3e-40180256278
                      -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      CqvegC++dls+ +eyhr+hkvCe+hskap+v+vsgle+rfCqqCsrfh l efD++k+sCrrrL++hn+rrrk+q+
  OPUNC06G24320.4 180 CQVEGCKVDLSSSREYHRKHKVCEAHSKAPKVIVSGLERRFCQQCSRFHGLAEFDQKKKSCRRRLSDHNARRRKPQQ 256
                      **************************************************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.4E-32172241IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.3177254IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.88E-38179259IPR004333Transcription factor, SBP-box
PfamPF031102.5E-31180253IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MASFGMNWNQ KSPVFWDWEN PAPFGPNTME NPKSIPHPEP RGVVVGAANH GSTNSSGGTF  60
TSSSELANGS SKSSLSASFD SSSKLGNSLE FRFASVKGHG KNMCKDGEAG RVEDSGTSPA  120
VAVSHGEPVI GLKLGKRTYF ENVCGGQNVK SSSAASAVTC PSTVVKKMKV SQQSTQSSYC  180
QVEGCKVDLS SSREYHRKHK VCEAHSKAPK VIVSGLERRF CQQCSRFHGL AEFDQKKKSC  240
RRRLSDHNAR RRKPQQEAIS FGSSRLASMF YDARQQTDIY FGQSPFGQVR SNAISSCDNL  300
GGFKFTEAKL PWMKPMKTIG LEDLHFSTVQ MPNNVVAHTV HHHDFDGLIP FKGNTTKVLN  360
QGVDPACAVV SSNSNGAPDL RRALSLLSSD SWGPADVQAG SQVHPGGVMP LLAVAATVTA  420
PTNSVSVMHA LHPSPGGGGF WQDDDDPAPL DHGVQAQAFM HLGNGSNSGF GNLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-271802531184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1235252KKKSCRRRLSDHNARRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0731790.0AK073179.1 Oryza sativa Japonica Group cDNA clone:J033004F21, full insert sequence.
GenBankAK1021360.0AK102136.1 Oryza sativa Japonica Group cDNA clone:J033085H14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643462.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_015643461.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_015643459.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_015643458.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_015643457.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_015643456.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_015643455.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_015643454.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_015643453.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_015643452.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_015643451.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_015643450.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_015643449.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_015643448.10.0PREDICTED: squamosa promoter-binding-like protein 12
SwissprotA2YGR50.0SPL12_ORYSI; Squamosa promoter-binding-like protein 12
TrEMBLA0A0E0LFC80.0A0A0E0LFC8_ORYPU; Uncharacterized protein
STRINGBGIOSGA020577-PA0.0(Oryza sativa Indica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27370.42e-50squamosa promoter binding protein-like 10